Monday, June 30, 2008

Histopatology!


Fig1.1 Hotplate.
Added to explain in my reply to one of the comments.


Subject: Histology

I am posted to Histopathology/Cytology department, together with Ernest and Tira. ;) (Hope they can stand my craziness at times as the formalin is making us real high. LOl)
This week we are at the Histopathology department, and I heard that we will be in cytology for a month! We been there before, during our tour and I saw the Biosafety Hood (remember what Ms. Chew mentioned before? Yes. The expensive one. )
_____________________________________________________________________________________
The overview of the Histopathology was explained to us by one of our friendly colleagues.
Surgeon cuts specimen of interest-->sends to Histopathology department receiving room-->request forms are checked thoroughly and biopsy no is issued to each patient/case-->sends specimen to trimming room(2 steps away only. Haha)-->pathologists trim big/large specimen while medical technologists trims smaller ones-->cut specimen placed in cassettes--> send for tissue processing--> embedding-->microtomy-->heat slides before staining (H&E as the most common staining)-->sorting slides according to the different doctors and the request forms--> send out for pathologists to read the slides

_____________________________________________________________________________________
Assisting during trimming:
These few days, we were allowed to observe how our colleagues and help out what we could. I assisted the pathologist during trimmer by preparing and labeling cassettes (using a special tissue and cassette marker which cannot be dissolved by any solvent known to the histo-department) for them according to the specimen received and jot down the number of cassettes used for each case before putting them into formalin. The most common specimens received are breast, uterus, colon and kidney and the others are lungs, bile, prostate, fetus, and placenta. I even found out from our colleagues that they had received eyeball and an entire leg before! During trimming, the pathologist will also dictate what they observed, for instance, a cyst in found __ cm near the right margin. These dictations will be sent to the admin staff who will type it out as a report to be attached to the respective request form. Sometimes, the pathologists will also ‘colour’ the specimen using special dyes of different colours as to denote the different parts of the specimen.

Fishing:
Other than assisting during trimming, we also did fishing, heating of slides and sorting slides. After cutting the tissues using the microtomy, we will put the tissues into cold water first before putting them into the water bath. This is to increase the surface tension of the tissues, so that there will be no folds on the tissues which can hinder reading of slides. The water bath has an alarm system so that once the temperature is above 550C, the alarm will beep. The optimum temperature is between 500C to 540C. We will fish the tissues before labeling them according to what is stated on the cassettes. Everyday, we will fish from around 8am to 10 plus am, depending on the workload. Tissues are to be fished in the middle of the slide with the same orientation as the specimen embedded in the paraffin wax. If tissues are fished too high on the slide, it may be properly stained by the auto-stainer (machine for staining). If too low, tissue may be damaged during heating when not properly handled. The correct orientation facilitates checking of slides with cassettes before sending them out to the doctors and pathologists. Smaller tissues (app. 1cm by 1cm) are fished 6 in a slide, 2 by 2 by 2 slices, while normal size tissues are 1 per slide.

Heating:
After fishing, the slides will be tap dry before placing them slanted(partially) on the hot plate to remove all the water on the slide first. This is to prevent ‘smearing’ or moving of tissues out of their positions (on the slide) when they are heated on the hot plate for 3 mins at the highest temperature on the machine (the knob is pointing at 10, the maximum).

Staining:
After heating the slides, we will load the slides for H&E staining into this awesome machine called an auto-stainer. There is a total of 18 buckets of reagents, with 0.5% acid alcohol and lithium carbonate (not for H&E but for other types of staining). This machine also incorporates a part where it mounts the coverslip for you! So fast and with no air bubbles in it! Not like that time where our fingers trembled when placing coverslip. Some slides are requested for special staining like GMS and PAS where they will be placed in another machine. Some types of staining even need up to 1.5 hours!

Sorting:
After the slides are mounted, we will sort them according to their batch no and biopsy no before sorting them again according to respective request forms and the different doctors. These will be checked by our colleagues before sending them out.

The manpower in histopathology department is rotated throughout the different sections, for instance, receiving, trimming, embedding, microtomy, and staining. The hospital we are in receives the most no of specimens and requests everyday, which explains the large no of slides we do everyday. The staff there are also very experience, many of whom with at least 8 years of experience in histopathology department!

Posted by:
Ting Ying Chee =D
0606530D

Thursday, June 26, 2008

My experience in bio/immuno lab :)

Subject: Chemistry and Immunology

Hi guys!

I'm posted to Biology and Immunology for this week:)

Basically in the bio/immuno section, we handle samples that requires chemistry and immunology testing. Upon receiving the samples, we are to sort them into different catergories and send them to respective machines for testing.

The categories are:
1) Chemistry
2) Immunology
3) Mixed

Chemistry
Types of tests:
Tchol, HDL, Tg, Chol, CO2, Glu, K, Na, Cl, TP, ALT, AST, GGT, alb, glob, ratio(A/G), T-Bil, Ca, Phos, CPR Quant/latex, HS CRP, Amylase, UA, APO-A, APO-B, D-Bil, Fe, D-Dimer, Mg

Those highligted in green are normal tests requested.
Here we test the sample under a machine called ModP. These samples are easy to handle as we only need to load them in the machine, press START and wait for the results that will be shown on the computer:)

Those highlighted in purple, they are samples we have to take note of.
ModP will not be able to detect them hence we use a more specialized machine Cobas501.

For Cobas501, it is able to detect all type of chemistry tests.
So why don't we just use Cobas for all chemistry tests?
It is because Cobas is a much smaller machine than ModP... Hence ModP is usually used as it is able to process more speicmens.

Immunology
Type of tests:
TSH, FTy, FT3, CA, CEA, PSA, Testro, HIV, FSH, LH, Prolactin, Progesterone, Ferretom, Abs, Ag, HAV, HBeAg, Afp, Trop T, CK-MB, B-hCG, anti-HBe, anti-HBC, anti-HBCIgM, anti-HCV, anti-EBV, anti-dsDNA, Rubella-IgG

Similarly to chemistry, there are samples that we run normally and others that we must take note of.
For normal tests requested, we use modEAO
For specialized tests, we use Eles2010. These samples we have to run maunally, where we have to key into the machine what specific tests to perform.

Mixed
The tests requested consist of both type! So samples are run in respective machines.

All samples are run in plain tubes except D-dimer where it is run in sodum citrate tube.


The procedures above are the general tests we perform. However we also handle other cases like:
-Oral Glucose Tolerance Test(OGTT)
test for: diabetes
sample: fasting glucose, 1st he glucose and 2nd hr glucose
machine used: modP
tube used: fluoride tube

-HbAIC (more specific test for diabetes)
machine used: D10
tube used: EDTA tube

-Micoalbumin(Quanti)
test for: urine(normal/abonormal)
uses: Clinitex and urine strips

-G6PD
test: manually perform on test strip and looked under long wave
results: If baby is normal, sample will fluoresce)

-Microsomal Ab
test: performed on microtitre plate


ok so heres a recap!
chemistry testing---- modP or Cobas
immunology testing-- modEAO or Eles2010
diabetes------------- OGTT or HbAIC in D10
urine(microalbumin)- Clinitex
G6PD---------------- Manual testing on test strip
Microsomal Ab------- Manual testing on microtitre plate

Additional info~
Test tubes:
Yellow- plain tube with gel
Red --- plain without gel
Blue--- sodium citrate (D-dimer)
Purple- EDTA
Grey--- fluoride (glucose)
Green-- lithium haprine

Posted by=)
Kum Hui Min
0605989C

Monday, June 16, 2008

LMQA: Ways to reduce waste

Generation of waste is inevitable, especially in clinical labs where routine tests or research programs[1] are being conducted. However, minimization of waste should be in place[2], whenever possible to minimize the pollution of the environment[2],[3], exposure of personnel to toxic and hazardous materials[2],[3] and to help in conservation of the world resources[3]. By cutting down the generation of waste, clinical labs can also cut down on the cost of purchasing raw materials[3].

How can we minimize waste production?

Management
  1. Set goals in the department to limit the generation of waste[2]
  2. Create an inventory of chemicals and other raw materials and equipments[2]
    a) With the inventory, unused materials or materials that are close to the expiry date can be sent to other department to be used, if possible[2].
    b) Using updated inventory, purchase only the materials needed as to minimize having expired or deteriorated chemicals or materials that add to the generation of waste[2].

Lab Technician

  1. Perform small-scaled experiments whenever possible[2]
  2. Limit the use of highly hazardous materials[2],[4]
    Examples of hazardous chemicals are: mercury, ethylene oxide, formaldehyde[3]
    For instance, use Syber Green instead of ethidium bromide[2]
  3. Recycle spent solvents by reusing[2]
  4. In catalyst reaction, retrieve the metal used[2]
  5. Recycle solid materials such as packaging, papers, computer monitors[1],[2]

References

  1. University of Minnesota. Minnesota Technical Assistance Program. Laboratories. Retrieve on 15 June, 2008 from http://mntap.umn.edu/labs/index.htm
  2. The Geroge Washington University. The Office of Risk Management. Retrieve on 15 June , 2008 from http://www.gwu.edu/~riskmgnt/wasteminimize.cfm
  3. Basal Action Network. Basal Convention Meetings- Clinical Waste in Developing Countries. Retrieve on 15 June, 2008 fromhttp://www.ban.org/subsidiary/clinical.html
  4. University of Minnesota. Minnesota Technical Assistance Program. Source Newsletter. (2006) Retrieve on 15 June, 2008 from http://mntap.umn.edu/source/2006-2/procedures.htm


Done by: Ting Ying Chee TG01
Topic: Safety aspects in clinical laboratories and ISO14K


LMQA: Types of waste in laboratory

Types of waste:


1) Biohazards
· Infectious, hazardous[5]
E.g. cultures[5]


2) Flammable
· Liquid: cause fire in dry or moist air at ≤61°C[1]
· Solid/semi-solid: gives off flammable vapors <38°c[1]>


3) Toxic
· Cause cell death or injury
· Contaminated material toxic to cells[2]


4) Corrosive
· pH <> 12.5[1]
· Able to corrode steel[1]
E.g. HCl[1]


5) Radioactive
· Contaminated with radioactive substances[2]
· Hazardous[4]
E.g. contaminated sharps, human waste (urine, feces)


6) General
· Waste not mention above
· Unable to be re-used, recycle, reprocessed[2]
E.g. sanitary waste[2]

No. of words: 97

References:
1. McGovern, Francis L. Laboratory Waste GuideBook. Retrieved June 16, 2008 from http://www.uri.edu/safety/documents/URI%20Guidebook%20with%20indices.pdf
2. Generic Hospital. (March 1999). Waste Management Plan. Retrieved June 16, 2008 from http://www.wmaa.asn.au/uploads/documents/IR_NSWH.pdf
3. The University of Melbourne. (November 2004). Waste Management. Retrieved June 16, 2008 from http://www.physiology.unimelb.edu.au/ehs/wastemanagement.asp#biohazwaste
4. Alberta Environmental Protection. Waste Minimization Manual. Retrieved June 16, 2008 from http://www.p2pays.org/ref/04/03277.pdf
5. Oklahoma State University. Student Module: Biohazard Waste. Retrieved June 16, 2008 from http://www.pp.okstate.edu/ehs/modules/BIOHAZ.HTM


Done by: Sharon Quek, TG01
Topic: Safety aspects in clinical laboratories and ISO14K.

LMQA: ISO 14000

What is ISO 14000?





ISO stands for International Organization for Standardization [1], which develops series of references to produce quality products, facilitate trading etc. [2].

ISO 14000 acts on the environmental aspect.
The areas involved are [3]:
•Environmental Management Systems (EMS)
•Environmental Auditing & Related Investigations (EA&RI)
•Environmental Labels and Declarations (EL)
•Environmental Performance Evaluation (EPE)
•Life Cycle Assessment (LCA)
•Terms and Definitions (T&D)

EMS deals with the clinical waste through reducing, reusing and recycling. Through this, lesser waste is produced (less contamination of air, water and soil and less landfill required) and thus saves resources [4].

Word count: 97 words

Reference:
[1] The International Standards Glossary (2008) The ISO Standards Glossary
Retrieved June 16, 2008 from
http://www.standardsglossary.com/

[2] International Standards for Business, Government and Society (2008) Discover ISO
Retrieved June 16, 2008 from
http://www.iso.org/iso/about/discover-iso_what-standards-do.htm

[3] Omnex Inc, USA (2008) ISO 14000 Environmental Management Systems
Retrieved June 16, 2008 from
http://www.omnex.com/standards/iso_14000/iso_14000.html

[4] Transformation Strategies (2002) ISO 14000 Environmental Management Systems
Benefits
Retrieved June 16, 2008 from
http://www.trst.com/iso1-frame.htm#social

Done by: Kum Hui Min TG01
Topic: Safety aspects in clinical laboratories and ISO14K

LMQA: Ways to recycle waste in laboratory

It is important to recycle waste in order to save energy and conserve the environment[1] and preventing pollution.

Ways to recycle waste:
- Papers can be recycled by mixing them with fresh wood pulp. By doing so, it can save energy[2].
- Most glasses can be recycled. They are sorted into 3 main types of color[3] before recycling. This can conserves raw materials, reduce energy consumption and reduce waste[3].
- Plastics can also be recycled but it is harder to recycle. They are sorted into their resin identification code[4] before recycling.
- Computers or computer parts can be recycled so as to reduce the waste in landfill, reduce the need for strip mining and also to reduce pollution by lead, mercury and cadmium[5].


Reference:
1. The Guides Network (2008). Why recycle. Retrieved June 16, 2008, from http://www.recycling-guide.org.uk/facts.html
2. National Energy Education Development Project, Museum of Solid Waste (2006). Recycle paper. Retrieved June 16, 2008 from http://www.eia.doe.gov/kids/energyfacts/saving/recycling/solidwaste/paperandglass.html
3. Glass recycling information sheet(2008). Glass recycling. Retrieved June 16, 2008 from http://www.wasteonline.org.uk/resources/InformationSheets/Glass.htm
4. Wikepedia Foundation Inc(2008). Plastic recycling. Retrieved June 16, 2008 from http://en.wikipedia.org/wiki/Plastic_recycling
5. WasteCap of Massachusetts(1992). Benefits of Recycling or Reusing Computers. Retrieved June 16, 2008 from http://www.wastecap.org/wastecap/commodities/computers/computers.htm

Done by: Justina Tan TG01
Topic: Safety aspects in clinical laboratories and ISO14K.

LMQA: Ways to handle waste generated in laboratory

Hazardous chemical waste, which can be flammable, biohazardous, corrosive or reactive [1], is to be handled with proper PPE on.

Biohazard waste, such as sharps and pathogenic wastes are to be contained in the biohazard bin and contaminated cultures should be autoclaved before disposal.

Waste containers must be of leak proof and properly labeled with identity and the natural state of the waste, name of personnel responsible and if the content is a mixture[1].

The hazardous waste containers are emptied by authorized collectors to be further treated while non- hazardous, such as glucose [1] and uncontaminated sharps are placed in non-hazardous chemical waste or broken glassware container [1] accordingly, instead of regular trash [3].


Reference:

[1] McGovern, Francis L. Laboratory Waste GuideBook. Retrieved June 15, 2008, Web site: http://www.uri.edu/safety/documents/URI%20Guidebook%20with%20indices.pdf

[2] Cornell University, (December, 2000). Procedures for Chemical Waste Disposal. Retrieved June 16, 2008, Web site: http://www.ehs.cornell.edu/chem_lab_safety/chem_manual.cfm

[3] Division of Hazardous Waste Management (DHWM), Ohio EPA (Jan 2005). Managing Hazardous Waste In Laboratories. Retrieved June 15, 2008, Web site: http://www.epa.state.oh.us/dhwm/pdf/ManagingHazardousWasteFromLaboratories.pdf

Done by: Tan Zhao Rong, TG01.
Topic: Safety aspects in clinical laboratories and ISO14K.